Information for 2-GATKGAGTGATGARKG (Motif 2)

A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
Reverse Opposite:
A T G C G T A C G A T C G A C T A G T C G T C A A C G T G T A C T C G A G A T C A C G T T A G C G T A C T G C A A G C T A G T C
p-value:1e-9
log p-value:-2.119e+01
Information Content per bp:1.684
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif91.6
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets53.6 +/- 22.3bp
Average Position of motif in Background51.7 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG-
NNNNNATTGATGNGTGN
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG
---TGATTGATGA---
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG
-TTTGATTGATGN---
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG
---TGATTTATGGC--
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GATKGAGTGATGARKG
---TGATTRATGGCY-
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG
--ATGATKGATGRC--
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GATKGAGTGATGARKG
-ATGGGGTGAT-----
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T A C G T A C G T A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GATKGAGTGATGARKG
AGATGKDGAGATAAG--
 A C G T A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GATKGAGTGATGARKG
-ATGGGGTGAT-----
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G
A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:GATKGAGTGATGARKG-
-----GGTGYTGACAGS
 A C T G C T G A A C G T C A T G A T C G G T C A C T A G A C G T A C T G G T C A A C G T A C T G C T G A C T A G C A T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G