Information for 2-GGCMKGCAGGMTG (Motif 7)

A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
Reverse Opposite:
A G T C G C T A A C G T A G T C A G T C A C G T A C T G A G T C G T A C A C G T A T C G A G T C A G T C
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.811
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif67.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets26.6 +/- 6.8bp
Average Position of motif in Background46.4 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCMKGCAGGMTG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGCMKGCAGGMTG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCMKGCAGGMTG
NGTAGGTTGGCATNNN-
 A C G T A C G T A C G T A C G T A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGCMKGCAGGMTG--
-----ACAGGAAGTG
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGCMKGCAGGMTG--
-----ACAGGAAGTG
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGCMKGCAGGMTG
----CACAGN---
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCMKGCAGGMTG
TBGCACGCAA----
 A C G T A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCMKGCAGGMTG
-----CCAGACAG
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCMKGCAGGMTG
AAGGKGRCGCAGGCA-
 A C G T A C G T A C G T A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGCMKGCAGGMTG--------
-GCCASCAGGGGGCGCYVNNG
 A C T G A C T G A T G C G T C A A C T G A C T G A G T C C G T A A C T G T A C G G T C A C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G