Information for 2-ACAADHAGCACDBACT (Motif 2)

C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
Reverse Opposite:
C T G A A C T G A C G T T C G A G A C T A C T G A C G T A C T G A G T C A C G T C A G T G C T A G C A T A C G T A T C G A C G T
p-value:1e-12
log p-value:-2.848e+01
Information Content per bp:1.754
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.2 +/- 24.2bp
Average Position of motif in Background57.0 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ACAADHAGCACDBACT---
---AGCGGCACACACGCAA
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:ACAADHAGCACDBACT
-----AAGCACTTAA-
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.57
Offset:7
Orientation:forward strand
Alignment:ACAADHAGCACDBACT-
-------GCACGTACCC
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACAADHAGCACDBACT---
---CGAAGCACACAAAATA
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:ACAADHAGCACDBACT
-------GCACGTAY-
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:ACAADHAGCACDBACT
-------GCACGTNC-
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ACAADHAGCACDBACT
----RGGGCACTAACY
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
A C G T A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0177.1_Sox7_2/Jaspar

Match Rank:8
Score:0.53
Offset:-11
Orientation:reverse strand
Alignment:-----------ACAADHAGCACDBACT
NNCNNNCNCANACAATTAGNAC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ACAADHAGCACDBACT
------ACCACTTAA-
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:ACAADHAGCACDBACT--
-------NNACTTACCTN
 C G T A A T G C G T C A C G T A C A G T G C T A C G T A C T A G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G