Information for 6-YKCCKGGCTGYAT (Motif 5)

A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
Reverse Opposite:
G T C A A C G T C T G A A G T C C G T A A C T G A G T C A G T C G T C A A C T G A C T G G T C A C T G A
p-value:1e-11
log p-value:-2.616e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.7 +/- 26.2bp
Average Position of motif in Background71.9 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YKCCKGGCTGYAT
-----NGCTN---
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----YKCCKGGCTGYAT
GTCATGCHTGRCTGS--
 A C G T A C G T A C G T A C G T A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:YKCCKGGCTGYAT
------GCTGTG-
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:YKCCKGGCTGYAT
---TWGTCTGV--
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YKCCKGGCTGYAT
-TNNGGGCAG---
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----YKCCKGGCTGYAT
NGTCACGCTTGGCTGC--
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:YKCCKGGCTGYAT----
-----GGCTCYAKCAYC
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:YKCCKGGCTGYAT
---CTGTCTGG--
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---YKCCKGGCTGYAT
NACTTCCGGGTT----
 A C G T A C G T A C G T A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A G T C C T G A G A T C C G A T A G C T A G T C A G T C A C T G A T C G C A T G C G A T G C A T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YKCCKGGCTGYAT
-ACCCGGATGTA-
 A G C T A C G T A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A G C T T C G A A C G T
A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T