Information for 3-AGGCAGCCCGGTTCAG (Motif 4)

C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T C A T C G A A G T C T G A C C T A G C T A G C T A G G A T C A C G T A T C G A T G C A G T C C G A T
p-value:1e-13
log p-value:-3.030e+01
Information Content per bp:1.784
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 19.5bp
Average Position of motif in Background31.3 +/- 0.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG---
---CGCGCCGGGTCACGTA
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG
GGTCANYTGAGGWCA-
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.50
Offset:9
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG
---------AGGTCA-
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG
------CCAGGAACAG
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

POL002.1_INR/Jaspar

Match Rank:5
Score:0.48
Offset:12
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG----
------------TCAGTCTT
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.48
Offset:6
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG
------CAAAGGTCAG
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.47
Offset:3
Orientation:forward strand
Alignment:AGGCAGCCCGGTTCAG---
---AGAGCGGGGTCAAGTA
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGCCCGGTTCAG--
NGAGGTCANNGAGTTCANNN
 A C G T A C G T C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.46
Offset:11
Orientation:reverse strand
Alignment:AGGCAGCCCGGTTCAG-
-----------CACAGN
 C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:10
Score:0.46
Offset:-4
Orientation:reverse strand
Alignment:----AGGCAGCCCGGTTCAG
NNGAGGTTACTNNAGGTCA-
 A C G T A C G T A C G T A C G T C G T A A C T G T A C G A T G C G T C A C A T G A G T C A G T C A G T C A C T G A C T G A G C T A C G T A G T C C G T A A C T G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T