Information for 5-ATTGGCTAGTCCG (Motif 3)

C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
Reverse Opposite:
A G T C A T C G A T C G C G T A A T G C A G C T C G T A A C T G A G T C A G T C C G T A C G T A A C G T
p-value:1e-13
log p-value:-3.030e+01
Information Content per bp:1.849
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.3 +/- 20.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--ATTGGCTAGTCCG
TGATTGGCTANN---
 A C G T A C G T C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGCTAGTCCG
CCGATTGGCT------
 A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGCTAGTCCG
CTGATTGGTCNATTT-
 A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATTGGCTAGTCCG
-TTGGCA------
 C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATTGGCTAGTCCG
NTTGGCANN----
 C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ATTGGCTAGTCCG
-TWGTCTGV----
 C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:7
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------ATTGGCTAGTCCG
GTAACTAATTAACTACT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATTGGCTAGTCCG
CGTGGGTGGTCC-
 C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------ATTGGCTAGTCCG
TAAACTAATTAGCTGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ATTGGCTAGTCCG
---NGCTN-----
 C G T A A C G T A C G T C T A G A C T G A G T C A C G T C T G A A T C G A C G T A T G C A T G C T A C G
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T