Information for 11-CYGTCTGTCCCTC (Motif 12)

A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
Reverse Opposite:
A C T G T C G A A C T G A C T G A T C G G T C A A T G C C G T A A C T G C G T A A G T C C T G A A C T G
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.841
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.4 +/- 24.3bp
Average Position of motif in Background39.7 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CYGTCTGTCCCTC
CTGTCTGTCACCT
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CYGTCTGTCCCTC
CTGTCTGG-----
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CYGTCTGTCCCTC
-TGTCTGDCACCT
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CYGTCTGTCCCTC
VBSYGTCTGG-----
 A C G T A C G T A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CYGTCTGTCCCTC
GCCATCTGTT----
 A C G T A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CYGTCTGTCCCTC
ACCATCTGTT----
 A C G T A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CYGTCTGTCCCTC-
--GSCTGTCACTCA
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CYGTCTGTCCCTC
CCNNACCATCTGGCCTN-
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C
A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CYGTCTGTCCCTC--
----NCTTCCCGCCC
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CYGTCTGTCCCTC-
----CTGTTCCTGG
 A G T C A G C T C T A G A C G T A G T C A C G T A T C G A C G T A T G C A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G