Information for 1-GTTTAGACTG (Motif 5)

A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G
Reverse Opposite:
A G T C G C T A A T C G C G A T G A T C C A G T G T C A C T G A T C G A T G A C
p-value:1e-6
log p-value:-1.546e+01
Information Content per bp:1.553
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif20.33%
Number of Background Sequences with motif3056.6
Percentage of Background Sequences with motif6.32%
Average Position of motif in Targets47.4 +/- 23.4bp
Average Position of motif in Background49.7 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTTTAGACTG
CGTCTAGACA-
 A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

POL002.1_INR/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GTTTAGACTG-
---NNNANTGA
 A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T
A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGACTG----
NSTGTTTRCWCAGBNNN
 A C G T A C G T A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GTTTAGACTG
--BCAGACWA
 A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTTAGACTG
CBTGTTTAYAWW-
 A C G T A C G T A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTTTAGACTG-
TGTTTACTTAGG
 A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTTTAGACTG-
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTTTAGACTG
--CCAGACAG
 A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTTTAGACTG---
---NHAACBGYYV
 A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

PB0109.1_Bbx_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GTTTAGACTG--
TGATTGTTAACAGTTGG
 A C G T A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A G T G T C A C T A G G C T A T A G C C G A T T C A G A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G