Information for 4-HCCBVVATGVADGGCG (Motif 5)

G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
Reverse Opposite:
A T G C A C T G G T A C A G T C G A T C A C G T A C T G G T A C C T G A A G C T A G T C A G T C T A G C C T A G A C T G C A G T
p-value:1e-6
log p-value:-1.559e+01
Information Content per bp:1.627
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif37.50%
Number of Background Sequences with motif123.3
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets53.7 +/- 3.3bp
Average Position of motif in Background52.9 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:HCCBVVATGVADGGCG---
--------TAATGGCGGNC
 G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.48
Offset:8
Orientation:reverse strand
Alignment:HCCBVVATGVADGGCG-
--------TNNGGGCAG
 G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-HCCBVVATGVADGGCG
GTCATGCHTGRCTGS--
 A C G T G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:4
Score:0.46
Offset:-1
Orientation:reverse strand
Alignment:-HCCBVVATGVADGGCG
TACCCGCATN-------
 A C G T G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----HCCBVVATGVADGGCG
TCGTACCCGCATCATT----
 A C G T A C G T A C G T A C G T G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.46
Offset:12
Orientation:reverse strand
Alignment:HCCBVVATGVADGGCG----
------------GGCGCGCT
 G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.45
Offset:-2
Orientation:reverse strand
Alignment:--HCCBVVATGVADGGCG
GTACCCGCATN-------
 A C G T A C G T G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.45
Offset:8
Orientation:forward strand
Alignment:HCCBVVATGVADGGCG-------
--------CAAAGGCGTGGCCAG
 G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

ZNF143/MA0088.2/Jaspar

Match Rank:9
Score:0.45
Offset:-2
Orientation:forward strand
Alignment:--HCCBVVATGVADGGCG
TACCCACAATGCATTG--
 A C G T A C G T G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.44
Offset:6
Orientation:reverse strand
Alignment:HCCBVVATGVADGGCG-------
------NAGANTGGCGGGGNGNA
 G A C T A G T C A G T C A C T G T A C G T A C G C T G A A G C T A C T G T A G C G T C A C A T G A C T G A C T G G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A