Information for 2-GCAGAGAAAGAGA (Motif 9)

A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGAAAGAGA
GAAAGTGAAAGT--
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGAAAGAGA
AGAAAGTGAAAGTGA
 A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGAAAGAGA-
AAACAGACAAAGGAAT
 A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCAGAGAAAGAGA
--AGAGGAAGTG-
 A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T

IRF1/MA0050.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAAAGAGA--------
AAANNGAAAGTGAAAGTAAAN
 A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCAGAGAAAGAGA----
-----GAAAGTGAAAGT
 A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAGAGAAAGAGA
CGGAAGTGAAAC---
 A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCAGAGAAAGAGA----
-----GAAACTGAAACT
 A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGAAAGAGA
GGAAGTGAAAST--
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAGAGAAAGAGA
ANAGATAAGAA--
 A C T G A G T C C G T A A C T G C G T A A C T G C G T A C G T A C G T A A C T G C G T A A C T G C G T A
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T