Information for 2-GCACGGTCCG (Motif 6)

A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G C G T A A G T C A G T C A C T G A C G T A C T G A G T C
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.0 +/- 0.0bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCACGGTCCG---
-CAACGTCCGCGG
 A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G A C G T A C G T A C G T
A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

HES7/MA0822.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCACGGTCCG
TGGCACGTGCCA
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

HES5/MA0821.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCACGGTCCG
TGGCACGTGCCG
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCACGGTCCG
GCACGTNC--
 A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCACGGTCCG
GCACGTAY--
 A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCACGGTCCG
GGCACGCGTC-
 A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCACGGTCCG
----GCTCCG
 A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCACGGTCCG
GGCACGTGNC-
 A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

Hes2/MA0616.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCACGGTCCG---
GCACGTGTCNNNN
 A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G A C G T A C G T A C G T
A C T G A G T C C G T A A G T C A C T G A G C T A C T G A G C T A T G C A C T G C G A T C G A T C G T A

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCACGGTCCG-
GGAGAAAGGTGCGA
 A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C T G A C G T A G T C A G T C A C T G A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A