Information for 1-KKMASTSTKCSCM (Motif 4)

A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C
Reverse Opposite:
A C T G A C T G A T C G A C T G T G A C C G T A T A C G C G T A A T C G A C G T A C G T G T A C G T C A
p-value:1e-4
log p-value:-1.091e+01
Information Content per bp:1.767
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif205.6
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets35.0 +/- 32.3bp
Average Position of motif in Background46.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KKMASTSTKCSCM-
TGACCTTTGCCCCA
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--KKMASTSTKCSCM--
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KKMASTSTKCSCM--
TGACCTTTGCCCTAN
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:KKMASTSTKCSCM-
TGACCTTTGCCCTA
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:KKMASTSTKCSCM--
-----HTTTCCCASG
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:KKMASTSTKCSCM-
----CTGTTCCTGG
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KKMASTSTKCSCM---
TGGACTTTGNNCTNTG
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:KKMASTSTKCSCM--
------ATGCCCACC
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KKMASTSTKCSCM-----
--GGGTGTGCCCAAAAGG
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:KKMASTSTKCSCM--
TGGACTTTGNNCTCN
 A C G T A C T G G T C A C G T A A T G C A C G T A T C G A C G T A C G T A G T C A T G C A G T C G T A C A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T