Information for 9-TCAGGTCAAG (Motif 19)

A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C T G C G T A
p-value:1e-3
log p-value:-8.150e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background60.8 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:TCAGGTCAAG----
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TCAGGTCAAG
TRAGGTCA--
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TCAGGTCAAG----
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TCAGGTCAAG
--AGGTCA--
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCAGGTCAAG--
CAAAGGTCAAGGG
 A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TCAGGTCAAG
-AAGGTCAC-
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCAGGTCAAG
ATCAAGGTCA--
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCAGGTCAAG--
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCAGGTCAAG
AGRGGTCA--
 A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCAGGTCAAG--
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A G T C C G T A C G T A A C T G A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A