Information for 4-ATGGGAGACAGACAGA (Motif 14)

T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C T G A G C T A G T C A C G T A C T G C G A T A G T C A C G T A T G C A G T C A G T C C G T A A C G T
p-value:1e-4
log p-value:-1.023e+01
Information Content per bp:1.941
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif33.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets9.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
--AGGTGNCAGACAG-
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ATGGGAGACAGACAGA
--AGGTGHCAGACA--
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
-TGGCAGNCTGCCAG-
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
-TGAGTGACAGSC---
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
-------CCAGACAG-
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA-
-------CCAGACRSVB
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ATGGGAGACAGACAGA--
-GGGRAARRGRMCAGMTG
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A A C G T A C G T
A C G T C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
-------BCAGACWA-
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:ATGGGAGACAGACAGA---
--CAAATCCAGACATCACA
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:ATGGGAGACAGACAGA
----NTGATTGACAGN
 T C G A C G A T A C T G C T A G A T C G C G T A A C T G C G T A G T A C C G T A A C T G C T G A A G T C C G T A A C T G C T G A
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G