Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 948)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46854)	% of Background Sequences with Motif
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-16	-3.805e+01	0.0000	213.0	22.47%	5898.9	12.59%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-16	-3.753e+01	0.0000	233.0	24.58%	6707.0	14.31%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-14	-3.400e+01	0.0000	108.0	11.39%	2311.7	4.93%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-14	-3.356e+01	0.0000	303.0	31.96%	9849.1	21.02%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-11	-2.606e+01	0.0000	104.0	10.97%	2487.6	5.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-10	-2.504e+01	0.0000	96.0	10.13%	2255.0	4.81%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.236e+01	0.0000	125.0	13.19%	3427.3	7.31%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-2.061e+01	0.0000	83.0	8.76%	1999.8	4.27%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-8	-2.008e+01	0.0000	91.0	9.60%	2304.1	4.92%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.987e+01	0.0000	67.0	7.07%	1489.5	3.18%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-7	-1.832e+01	0.0000	18.0	1.90%	161.5	0.34%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-7	-1.831e+01	0.0000	77.0	8.12%	1894.8	4.04%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.818e+01	0.0000	20.0	2.11%	202.3	0.43%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-7	-1.807e+01	0.0000	54.0	5.70%	1134.7	2.42%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-6	-1.601e+01	0.0000	164.0	17.30%	5410.7	11.55%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.594e+01	0.0000	121.0	12.76%	3676.9	7.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-6	-1.532e+01	0.0000	36.0	3.80%	668.6	1.43%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-6	-1.520e+01	0.0000	35.0	3.69%	642.1	1.37%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-6	-1.432e+01	0.0000	31.0	3.27%	550.0	1.17%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-6	-1.423e+01	0.0000	123.0	12.97%	3882.2	8.29%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-6	-1.409e+01	0.0000	31.0	3.27%	556.4	1.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.367e+01	0.0000	18.0	1.90%	222.3	0.47%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-5	-1.326e+01	0.0000	28.0	2.95%	492.2	1.05%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.283e+01	0.0000	85.0	8.97%	2488.0	5.31%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.273e+01	0.0000	36.0	3.80%	749.4	1.60%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-5	-1.260e+01	0.0000	90.0	9.49%	2697.2	5.76%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-5	-1.204e+01	0.0001	87.0	9.18%	2619.6	5.59%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-1.150e+01	0.0001	231.0	24.37%	8779.1	18.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-4	-1.138e+01	0.0001	65.0	6.86%	1822.0	3.89%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-1.111e+01	0.0002	17.0	1.79%	243.6	0.52%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-4	-1.103e+01	0.0002	51.0	5.38%	1329.7	2.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-4	-1.091e+01	0.0002	17.0	1.79%	247.8	0.53%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.032e+01	0.0004	90.0	9.49%	2867.4	6.12%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.031e+01	0.0004	50.0	5.27%	1331.6	2.84%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-4	-1.012e+01	0.0004	71.0	7.49%	2132.5	4.55%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-9.991e+00	0.0005	20.0	2.11%	349.6	0.75%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-4	-9.681e+00	0.0006	33.0	3.48%	766.9	1.64%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-4	-9.407e+00	0.0008	41.0	4.32%	1055.1	2.25%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-8.759e+00	0.0015	7.0	0.74%	55.2	0.12%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-8.601e+00	0.0017	38.0	4.01%	989.6	2.11%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.135e+00	0.0026	33.0	3.48%	835.5	1.78%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-8.133e+00	0.0026	16.0	1.69%	283.8	0.61%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-8.092e+00	0.0026	32.0	3.38%	802.3	1.71%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-7.967e+00	0.0029	31.0	3.27%	773.2	1.65%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-7.886e+00	0.0030	18.0	1.90%	349.5	0.75%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.770e+00	0.0033	13.0	1.37%	208.3	0.44%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-7.753e+00	0.0033	28.0	2.95%	679.9	1.45%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-7.584e+00	0.0039	22.0	2.32%	485.8	1.04%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-7.383e+00	0.0046	13.0	1.37%	217.7	0.46%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.269e+00	0.0051	42.0	4.43%	1212.8	2.59%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-7.251e+00	0.0051	31.0	3.27%	808.9	1.73%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-7.064e+00	0.0060	21.0	2.22%	472.1	1.01%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-6.981e+00	0.0064	31.0	3.27%	822.5	1.76%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-6.850e+00	0.0071	44.0	4.64%	1316.3	2.81%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.765e+00	0.0076	12.0	1.27%	204.6	0.44%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-6.759e+00	0.0076	39.0	4.11%	1131.3	2.41%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-6.748e+00	0.0076	52.0	5.49%	1636.1	3.49%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-6.514e+00	0.0093	21.0	2.22%	494.3	1.05%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.450e+00	0.0098	18.0	1.90%	397.9	0.85%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-6.360e+00	0.0105	46.0	4.85%	1429.4	3.05%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-6.114e+00	0.0132	89.0	9.39%	3229.4	6.89%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-2	-6.030e+00	0.0141	14.0	1.48%	284.1	0.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-6.002e+00	0.0143	12.0	1.27%	224.9	0.48%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.831e+00	0.0167	19.0	2.00%	455.2	0.97%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-5.678e+00	0.0192	43.0	4.54%	1363.9	2.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.638e+00	0.0196	59.0	6.22%	2016.5	4.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.506e+00	0.0221	84.0	8.86%	3087.0	6.59%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-5.464e+00	0.0227	27.0	2.85%	760.4	1.62%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.357e+00	0.0249	17.0	1.79%	407.1	0.87%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.341e+00	0.0249	79.0	8.33%	2892.5	6.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-5.177e+00	0.0289	80.0	8.44%	2955.5	6.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.134e+00	0.0298	25.0	2.64%	705.4	1.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.124e+00	0.0298	26.0	2.74%	744.0	1.59%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.111e+00	0.0298	75.0	7.91%	2748.5	5.87%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.091e+00	0.0298	10.0	1.05%	190.6	0.41%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-5.050e+00	0.0307	25.0	2.64%	710.5	1.52%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-5.032e+00	0.0309	9.0	0.95%	162.7	0.35%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-4.992e+00	0.0317	27.0	2.85%	789.9	1.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.889e+00	0.0347	36.0	3.80%	1147.3	2.45%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-4.766e+00	0.0387	11.0	1.16%	232.0	0.50%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-4.762e+00	0.0387	91.0	9.60%	3489.6	7.45%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-4.712e+00	0.0399	22.0	2.32%	618.8	1.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.706e+00	0.0399	92.0	9.70%	3541.1	7.56%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-4.613e+00	0.0430	19.0	2.00%	513.5	1.10%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.563e+00	0.0447	9.0	0.95%	175.9	0.38%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.406e+00	0.0516	31.0	3.27%	986.1	2.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.373e+00	0.0528	72.0	7.59%	2711.5	5.79%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.352e+00	0.0533	10.0	1.05%	213.9	0.46%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.344e+00	0.0533	58.0	6.12%	2111.3	4.51%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.299e+00	0.0549	36.0	3.80%	1196.5	2.55%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-4.208e+00	0.0595	7.0	0.74%	125.8	0.27%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-4.098e+00	0.0657	36.0	3.80%	1214.4	2.59%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-4.055e+00	0.0678	72.0	7.59%	2754.5	5.88%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.021e+00	0.0694	47.0	4.96%	1680.2	3.59%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.925e+00	0.0757	25.0	2.64%	785.2	1.68%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-3.867e+00	0.0793	26.0	2.74%	829.6	1.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.805e+00	0.0835	35.0	3.69%	1200.6	2.56%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.800e+00	0.0835	32.0	3.38%	1077.2	2.30%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.783e+00	0.0836	11.0	1.16%	268.1	0.57%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-3.717e+00	0.0885	68.0	7.17%	2626.7	5.61%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.674e+00	0.0915	18.0	1.90%	530.9	1.13%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.642e+00	0.0935	23.0	2.43%	727.4	1.55%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.602e+00	0.0964	57.0	6.01%	2160.6	4.61%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.601e+00	0.0964	20.0	2.11%	612.3	1.31%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.558e+00	0.0988	28.0	2.95%	935.6	2.00%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.557e+00	0.0988	10.0	1.05%	243.4	0.52%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.459e+00	0.1070	114.0	12.03%	4741.2	10.12%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.423e+00	0.1100	3.0	0.32%	34.2	0.07%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.411e+00	0.1103	27.0	2.85%	907.3	1.94%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-3.403e+00	0.1103	2.0	0.21%	14.3	0.03%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.253e+00	0.1268	25.0	2.64%	839.6	1.79%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.231e+00	0.1284	15.0	1.58%	443.4	0.95%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.216e+00	0.1292	32.0	3.38%	1133.3	2.42%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.205e+00	0.1295	28.0	2.95%	967.9	2.07%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.193e+00	0.1299	6.0	0.63%	123.0	0.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-3.163e+00	0.1328	28.0	2.95%	971.1	2.07%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.091e+00	0.1415	10.0	1.05%	264.9	0.57%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.966e+00	0.1590	25.0	2.64%	865.4	1.85%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.900e+00	0.1682	41.0	4.32%	1555.3	3.32%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.850e+00	0.1754	27.0	2.85%	960.5	2.05%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-2.828e+00	0.1778	20.0	2.11%	671.6	1.43%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.758e+00	0.1892	91.0	9.60%	3828.4	8.17%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.602e+00	0.2193	40.0	4.22%	1551.4	3.31%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.598e+00	0.2193	26.0	2.74%	944.8	2.02%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.580e+00	0.2208	8.0	0.84%	216.4	0.46%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.559e+00	0.2235	8.0	0.84%	217.1	0.46%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.555e+00	0.2235	22.0	2.32%	780.0	1.66%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.554e+00	0.2235	1.0	0.11%	4.6	0.01%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-2.536e+00	0.2235	20.0	2.11%	697.5	1.49%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.528e+00	0.2236	7.0	0.74%	182.1	0.39%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.496e+00	0.2290	155.0	16.35%	6883.4	14.69%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.418e+00	0.2456	5.0	0.53%	116.4	0.25%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.415e+00	0.2456	41.0	4.32%	1622.9	3.46%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.387e+00	0.2497	2.0	0.21%	25.9	0.06%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.310e+00	0.2676	8.0	0.84%	230.5	0.49%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.302e+00	0.2678	10.0	1.05%	308.7	0.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.277e+00	0.2726	41.0	4.32%	1643.3	3.51%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.259e+00	0.2754	25.0	2.64%	939.0	2.00%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.253e+00	0.2754	14.0	1.48%	474.0	1.01%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.225e+00	0.2810	11.0	1.16%	353.4	0.75%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.200e+00	0.2859	18.0	1.90%	645.9	1.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.199e+00	0.2859	2.0	0.21%	28.7	0.06%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.148e+00	0.2972	27.0	2.85%	1040.8	2.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.137e+00	0.2983	35.0	3.69%	1396.3	2.98%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.129e+00	0.2986	6.0	0.63%	164.3	0.35%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.038e+00	0.3248	35.0	3.69%	1411.1	3.01%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.030e+00	0.3253	115.0	12.13%	5126.2	10.94%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.969e+00	0.3432	25.0	2.64%	975.8	2.08%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.938e+00	0.3516	17.0	1.79%	629.2	1.34%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.935e+00	0.3516	66.0	6.96%	2851.7	6.09%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.931e+00	0.3516	53.0	5.59%	2250.6	4.80%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.883e+00	0.3642	71.0	7.49%	3096.7	6.61%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.868e+00	0.3674	37.0	3.90%	1529.2	3.26%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.864e+00	0.3674	21.0	2.22%	812.6	1.73%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.841e+00	0.3724	2.0	0.21%	35.3	0.08%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.818e+00	0.3789	22.0	2.32%	862.4	1.84%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.810e+00	0.3793	22.0	2.32%	863.3	1.84%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.780e+00	0.3885	11.0	1.16%	388.9	0.83%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.776e+00	0.3885	60.0	6.33%	2608.8	5.57%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.774e+00	0.3885	15.0	1.58%	560.2	1.20%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.732e+00	0.3999	28.0	2.95%	1143.6	2.44%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.712e+00	0.4055	8.0	0.84%	268.4	0.57%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.665e+00	0.4224	97.0	10.23%	4381.1	9.35%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.638e+00	0.4315	72.0	7.59%	3205.3	6.84%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.637e+00	0.4315	2.0	0.21%	41.0	0.09%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.616e+00	0.4356	10.0	1.05%	360.4	0.77%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.580e+00	0.4488	64.0	6.75%	2843.2	6.07%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.569e+00	0.4511	8.0	0.84%	279.2	0.60%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.565e+00	0.4511	2.0	0.21%	43.0	0.09%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.483e+00	0.4860	4.0	0.42%	120.0	0.26%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.464e+00	0.4895	1.0	0.11%	13.3	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.464e+00	0.4895	1.0	0.11%	13.2	0.03%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.449e+00	0.4939	6.0	0.63%	204.1	0.44%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.448e+00	0.4939	109.0	11.50%	5026.3	10.73%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.442e+00	0.4939	35.0	3.69%	1516.1	3.24%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.409e+00	0.5055	9.0	0.95%	336.4	0.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.402e+00	0.5059	12.0	1.27%	469.6	1.00%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.388e+00	0.5103	9.0	0.95%	338.5	0.72%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.372e+00	0.5157	2.0	0.21%	48.3	0.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.355e+00	0.5215	6.0	0.63%	211.8	0.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.355e+00	0.5215	16.0	1.69%	655.7	1.40%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.327e+00	0.5307	11.0	1.16%	433.1	0.92%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.327e+00	0.5307	30.0	3.16%	1306.9	2.79%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.312e+00	0.5328	10.0	1.05%	390.3	0.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.301e+00	0.5359	11.0	1.16%	436.9	0.93%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.297e+00	0.5359	14.0	1.48%	572.3	1.22%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.288e+00	0.5371	2.0	0.21%	51.6	0.11%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.285e+00	0.5371	1.0	0.11%	16.2	0.03%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.201e+00	0.5793	18.0	1.90%	770.0	1.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.193e+00	0.5813	17.0	1.79%	725.7	1.55%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.185e+00	0.5825	2.0	0.21%	55.4	0.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.181e+00	0.5825	13.0	1.37%	542.4	1.16%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.179e+00	0.5825	3.0	0.32%	96.5	0.21%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.156e+00	0.5906	27.0	2.85%	1200.8	2.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.126e+00	0.6053	4.0	0.42%	142.9	0.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.117e+00	0.6080	126.0	13.29%	5981.8	12.77%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.111e+00	0.6081	92.0	9.70%	4333.8	9.25%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.110e+00	0.6081	66.0	6.96%	3077.3	6.57%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.106e+00	0.6081	76.0	8.02%	3561.9	7.60%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.085e+00	0.6149	42.0	4.43%	1931.6	4.12%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.070e+00	0.6214	7.0	0.74%	281.4	0.60%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.041e+00	0.6360	11.0	1.16%	469.9	1.00%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.033e+00	0.6384	4.0	0.42%	149.5	0.32%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.028e+00	0.6384	181.0	19.09%	8710.1	18.59%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.028e+00	0.6384	79.0	8.33%	3736.0	7.97%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.027e+00	0.6384	11.0	1.16%	471.4	1.01%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.018e+00	0.6384	13.0	1.37%	566.1	1.21%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.003e+00	0.6417	78.0	8.23%	3697.2	7.89%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.968e-01	0.6428	7.0	0.74%	290.0	0.62%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.940e-01	0.6428	27.0	2.85%	1236.7	2.64%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.758e-01	0.6502	68.0	7.17%	3222.2	6.88%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.730e-01	0.6502	9.0	0.95%	385.5	0.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.505e-01	0.6606	76.0	8.02%	3621.2	7.73%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.483e-01	0.6606	21.0	2.22%	959.5	2.05%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.166e-01	0.6738	2.0	0.21%	68.6	0.15%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.166e-01	0.6738	2.0	0.21%	68.6	0.15%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.162e-01	0.6738	5.0	0.53%	205.3	0.44%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-9.035e-01	0.6765	69.0	7.28%	3299.6	7.04%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-8.805e-01	0.6891	29.0	3.06%	1361.7	2.91%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.652e-01	0.6965	1.0	0.11%	27.1	0.06%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.601e-01	0.6969	197.0	20.78%	9598.3	20.48%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.413e-01	0.7069	162.0	17.09%	7889.8	16.84%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.384e-01	0.7069	3.0	0.32%	119.6	0.26%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.196e-01	0.7160	22.0	2.32%	1037.2	2.21%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.858e-01	0.7373	26.0	2.74%	1241.4	2.65%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.708e-01	0.7451	5.0	0.53%	221.8	0.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.497e-01	0.7577	13.0	1.37%	614.3	1.31%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.438e-01	0.7589	6.0	0.63%	273.3	0.58%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.381e-01	0.7598	5.0	0.53%	225.6	0.48%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-7.277e-01	0.7644	40.0	4.22%	1947.8	4.16%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.223e-01	0.7653	5.0	0.53%	227.5	0.49%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.060e-01	0.7745	19.0	2.00%	919.9	1.96%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.047e-01	0.7745	18.0	1.90%	870.1	1.86%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.850e-01	0.7841	20.0	2.11%	974.6	2.08%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.741e-01	0.7894	11.0	1.16%	531.8	1.13%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.564e-01	0.8000	152.0	16.03%	7520.9	16.05%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.475e-01	0.8038	14.0	1.48%	686.5	1.47%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.369e-01	0.8089	3.0	0.32%	138.3	0.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.226e-01	0.8171	6.0	0.63%	291.9	0.62%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.225e-01	0.8171	26.0	2.74%	1291.4	2.76%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.101e-01	0.8206	3.0	0.32%	141.4	0.30%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.036e-01	0.8225	63.0	6.65%	3141.4	6.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.000e-01	0.8225	11.0	1.16%	547.2	1.17%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.881e-01	0.8286	2.0	0.21%	92.6	0.20%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-5.517e-01	0.8557	4.0	0.42%	200.9	0.43%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.427e-01	0.8600	1.0	0.11%	43.5	0.09%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.421e-01	0.8600	22.0	2.32%	1118.1	2.39%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.394e-01	0.8600	100.0	10.55%	5023.7	10.72%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.379e-01	0.8600	28.0	2.95%	1422.0	3.03%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.254e-01	0.8610	14.0	1.48%	718.6	1.53%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.237e-01	0.8610	37.0	3.90%	1881.4	4.02%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.216e-01	0.8610	8.0	0.84%	412.3	0.88%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.184e-01	0.8610	129.0	13.61%	6484.5	13.84%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.842e-01	0.8830	62.0	6.54%	3159.5	6.74%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.797e-01	0.8835	6.0	0.63%	317.3	0.68%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.783e-01	0.8835	3.0	0.32%	158.2	0.34%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.764e-01	0.8835	48.0	5.06%	2459.5	5.25%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.658e-01	0.8855	5.0	0.53%	267.8	0.57%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.634e-01	0.8855	1.0	0.11%	49.2	0.10%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.584e-01	0.8855	4.0	0.42%	215.5	0.46%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-4.552e-01	0.8855	11.0	1.16%	584.2	1.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.491e-01	0.8867	47.0	4.96%	2424.2	5.17%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-4.384e-01	0.8928	13.0	1.37%	693.1	1.48%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-4.366e-01	0.8928	36.0	3.80%	1873.4	4.00%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.339e-01	0.8928	7.0	0.74%	380.4	0.81%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.333e-01	0.8928	24.0	2.53%	1263.0	2.70%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.316e-01	0.8928	25.0	2.64%	1314.9	2.81%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.303e-01	0.8928	27.0	2.85%	1417.1	3.02%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.205e-01	0.8928	29.0	3.06%	1524.5	3.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.204e-01	0.8928	59.0	6.22%	3050.0	6.51%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.187e-01	0.8928	42.0	4.43%	2188.1	4.67%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.147e-01	0.8928	3.0	0.32%	168.5	0.36%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.147e-01	0.8928	26.0	2.74%	1374.0	2.93%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.030e-01	0.8928	3.0	0.32%	170.8	0.36%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.951e-01	0.8928	44.0	4.64%	2304.0	4.92%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.905e-01	0.8928	65.0	6.86%	3374.2	7.20%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.790e-01	0.8996	119.0	12.55%	6108.2	13.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.789e-01	0.8996	1.0	0.11%	57.8	0.12%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.732e-01	0.8996	147.0	15.51%	7521.0	16.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.653e-01	0.9022	7.0	0.74%	398.2	0.85%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.617e-01	0.9022	85.0	8.97%	4410.8	9.41%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.437e-01	0.9154	1.0	0.11%	61.8	0.13%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.415e-01	0.9154	18.0	1.90%	992.7	2.12%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.387e-01	0.9154	15.0	1.58%	835.1	1.78%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.339e-01	0.9154	16.0	1.69%	890.7	1.90%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.315e-01	0.9154	4.0	0.42%	241.4	0.52%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.233e-01	0.9179	4.0	0.42%	243.1	0.52%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.220e-01	0.9179	19.0	2.00%	1054.1	2.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.198e-01	0.9179	65.0	6.86%	3431.1	7.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-3.066e-01	0.9238	7.0	0.74%	416.8	0.89%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.065e-01	0.9238	14.0	1.48%	796.4	1.70%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.931e-01	0.9299	8.0	0.84%	476.6	1.02%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.925e-01	0.9299	10.0	1.05%	586.5	1.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.901e-01	0.9299	3.0	0.32%	193.1	0.41%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.763e-01	0.9360	40.0	4.22%	2181.2	4.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.709e-01	0.9379	4.0	0.42%	258.0	0.55%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.675e-01	0.9379	4.0	0.42%	258.6	0.55%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.636e-01	0.9384	28.0	2.95%	1563.9	3.34%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.621e-01	0.9384	49.0	5.17%	2660.7	5.68%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.551e-01	0.9401	2.0	0.21%	140.3	0.30%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.452e-01	0.9463	8.0	0.84%	495.4	1.06%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.445e-01	0.9463	22.0	2.32%	1258.8	2.69%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.440e-01	0.9463	24.0	2.53%	1365.8	2.91%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.374e-01	0.9463	18.0	1.90%	1048.9	2.24%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.364e-01	0.9463	21.0	2.22%	1210.5	2.58%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.307e-01	0.9463	93.0	9.81%	4958.8	10.58%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.282e-01	0.9463	26.0	2.74%	1483.7	3.17%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.259e-01	0.9463	67.0	7.07%	3628.9	7.74%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.154e-01	0.9498	4.0	0.42%	275.9	0.59%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.111e-01	0.9507	33.0	3.48%	1869.9	3.99%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.059e-01	0.9526	11.0	1.16%	683.6	1.46%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.960e-01	0.9590	32.0	3.38%	1830.6	3.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.751e-01	0.9761	11.0	1.16%	702.1	1.50%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.538e-01	0.9940	11.0	1.16%	717.1	1.53%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.450e-01	0.9996	88.0	9.28%	4834.6	10.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.402e-01	1.0000	64.0	6.75%	3591.5	7.66%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.355e-01	1.0000	1.0	0.11%	102.2	0.22%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.326e-01	1.0000	1.0	0.11%	103.3	0.22%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.300e-01	1.0000	11.0	1.16%	736.6	1.57%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.248e-01	1.0000	2.0	0.21%	182.8	0.39%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.240e-01	1.0000	66.0	6.96%	3725.4	7.95%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.116e-01	1.0000	1.0	0.11%	111.4	0.24%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.090e-01	1.0000	21.0	2.22%	1327.3	2.83%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.079e-01	1.0000	8.0	0.84%	578.9	1.24%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.071e-01	1.0000	41.0	4.32%	2426.9	5.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.008e-01	1.0000	62.0	6.54%	3561.1	7.60%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.002e-01	1.0000	72.0	7.59%	4091.3	8.73%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.824e-02	1.0000	1.0	0.11%	122.7	0.26%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-8.153e-02	1.0000	2.0	0.21%	207.4	0.44%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-8.014e-02	1.0000	21.0	2.22%	1370.7	2.93%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.463e-02	1.0000	10.0	1.05%	736.7	1.57%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.233e-02	1.0000	2.0	0.21%	214.1	0.46%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.801e-02	1.0000	9.0	0.95%	684.4	1.46%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.738e-02	1.0000	48.0	5.06%	2892.7	6.17%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.460e-02	1.0000	19.0	2.00%	1284.1	2.74%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.993e-02	1.0000	30.0	3.16%	1920.2	4.10%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.983e-02	1.0000	33.0	3.48%	2089.0	4.46%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.767e-02	1.0000	143.0	15.08%	7942.3	16.95%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-5.330e-02	1.0000	1.0	0.11%	146.1	0.31%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.286e-02	1.0000	66.0	6.96%	3912.8	8.35%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.007e-02	1.0000	1.0	0.11%	149.7	0.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.785e-02	1.0000	10.0	1.05%	832.7	1.78%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.611e-02	1.0000	10.0	1.05%	838.7	1.79%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.587e-02	1.0000	6.0	0.63%	573.9	1.22%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.414e-02	1.0000	13.0	1.37%	1036.0	2.21%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.850e-02	1.0000	3.0	0.32%	376.0	0.80%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.654e-02	1.0000	2.0	0.21%	299.1	0.64%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.286e-02	1.0000	1.0	0.11%	215.3	0.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.746e-03	1.0000	8.0	0.84%	819.7	1.75%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-9.540e-04	1.0000	2.0	0.21%	457.5	0.98%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	63.2	0.13%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	27.4	0.06%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	28.1	0.06%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	0.000e+00	1.0000	0.0	0.00%	55.3	0.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	83.5	0.18%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	51.8	0.11%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.4	0.02%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	23.2	0.05%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	92.8	0.20%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	21.9	0.05%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	19.0	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	71.7	0.15%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	2.4	0.01%