Information for 3-TTGGACTTTGCCC (Motif 4)

A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G C T A G A G T C C G T A C G T A C T G A A C T G A G C T A G T C A G T C C G T A G T C A
p-value:1e-13
log p-value:-3.002e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.3 +/- 16.6bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TTGGACTTTGCCC--
ATTGGACTTTGACCCC
 A C G T A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC----
-TGGACTTTGNNCTNTG
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC---
-TGGACTTTGNNCTCN
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---TTGGACTTTGCCC
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC--
-TGACCTTTGCCCTA
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTGGACTTTGCCC--
-TGACCTTTGCCCCA
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC---
-TGACCTTTGCCCTAN
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGGACTTTGCCC---
GTTGACCTTTGACCTTT
 A C G T A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC--
-TGACCTTTGACCCC
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGCCC--
-TGACCTTTGACCCC
 A C G T A C G T A C T G C T A G C T G A A G T C A G C T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C