Information for 5-RYCTTTTAWYATMTTK (Motif 13)

T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
Reverse Opposite:
T G C A C G T A C G T A A C T G C G T A A C G T C T G A G C A T A C G T C G T A C G T A C G T A C T G A C T A G C T G A A G C T
p-value:1e-10
log p-value:-2.346e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.7 +/- 18.6bp
Average Position of motif in Background53.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--RYCTTTTAWYATMTTK
NTNAATTTTATTGNATT-
 A C G T A C G T T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
NNTTTTTCTTATNT--
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
---TTTTATTRGN---
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
ANCGTTTANN------
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
NAATTTTATTACCTNN
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PB0129.1_Glis2_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
-TCTTTANTAATANN-
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RYCTTTTAWYATMTTK
TNAATTTTATTACCTN-
 A C G T T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
--NTTTTATGAC----
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
---TTTTATTGC----
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RYCTTTTAWYATMTTK
--NTTTTATTACN---
 T C G A A G C T A G T C A G C T A C G T A C G T A C G T C G T A C G T A A G C T C G T A A C G T G T A C C G A T A C G T A C G T
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T