Information for 5-CAGCCAATCG (Motif 11)

G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G
Reverse Opposite:
A G T C A C T G T G C A G C A T C A G T C A T G C A T G A T G C C A G T A C T G
p-value:1e-10
log p-value:-2.497e+01
Information Content per bp:1.655
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif656.5
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets51.1 +/- 27.5bp
Average Position of motif in Background47.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CAGCCAATCG-
-AGCCAATCGG
 G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATCG
ACTAGCCAATCA
 A C G T A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAATCG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATCG
-TGCCAA---
 G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG
BCAGACWA---
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCG
CGTGCCAAG--
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCG-
SCTGTCAVTCAV
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG-------
TGGACCAATCAGCACTCT
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCG----
SCAGYCADGCATGAC
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCG-
NCTGTCAATCAN
 A C G T G T A C G T C A T A C G G T A C G T A C G T C A C G T A A C G T T G A C T C A G A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A