Information for 6-GCTAATAGACTGA (Motif 7)

A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T G T A C C G T A A C T G A G C T A G T C G A C T C G T A A G C T A C G T C T G A C T A G G T A C
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.830
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 25.7bp
Average Position of motif in Background37.8 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0009.1_Bsx/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCTAATAGACTGA-
CAGGTAATTACCTCAG
 A C G T A C G T A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTAATAGACTGA
GTTAATGGCC---
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTAATAGACTGA
-YTAATYNRATTA
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTAATAGACTGA
-CTAATKGV----
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTAATAGACTGA
--TAATTAAATTA
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTAATAGACTGA
CCTTAATNGNTTTT
 A C G T A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTAATAGACTGA
-NTAATBNAATTA
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTAATAGACTGA
--TAATTAAATTA
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTAATAGACTGA
GCTAATTGCT---
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTAATAGACTGA
-NTAATTGN----
 A C T G G A T C A G C T C G T A C T G A A C G T C T G A A C T G C T G A A G T C A C G T A C T G C G T A
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T