Information for 20-ACTAGCYAGTCCA (Motif 28)

C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G A C T G G T C A A G T C C G A T C T A G A C T G G T A C A C G T C G T A A C T G C G A T
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.770
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.0 +/- 26.9bp
Average Position of motif in Background59.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCYAGTCCA
NNACTTGCCTT----
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTAGCYAGTCCA
ACTAGCCAATCA-
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACTAGCYAGTCCA---
GNNAGCTAATCCCCCN
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ACTAGCYAGTCCA
----GCTAATCC-
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACTAGCYAGTCCA----
AATCGTTAATCCCTTTA
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ACTAGCYAGTCCA
-----CTAGGCCT
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:ACTAGCYAGTCCA
ACTTCCTBGT---
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
T C G A A G T C A G C T C G A T A G T C A T G C A C G T A T G C T C A G C G A T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:ACTAGCYAGTCCA
---TKCTGTTCCA
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A
A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:ACTAGCYAGTCCA-----
-NTTGTTAATCCCTCTNN
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:ACTAGCYAGTCCA-----
-CGACCCAATCAACGGTG
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A C T A G A C G T A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G