Information for 11-CGYWWRGCAAARG (Motif 16)

G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C T G A G T C A G C T C G T A C G T A C T A G A G T C A C T G
p-value:1e-9
log p-value:-2.209e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.5 +/- 16.3bp
Average Position of motif in Background28.8 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGYWWRGCAAARG-
CCGCATAGCAACGGA
 A C G T G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGYWWRGCAAARG
---AAAACAAAGG
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGYWWRGCAAARG
-----RACAAWGG
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGYWWRGCAAARG---
-GTAGGGCAAAGGTCA
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CGYWWRGCAAARG
-----AACAAAGG
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGYWWRGCAAARG---
--TAGGGCAAAGGTCA
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T A C G T A C G T
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGYWWRGCAAARG----
AGAAGAACAAAGGACTA
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGYWWRGCAAARG-
TACCATAGCAACGGT
 A C G T G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGYWWRGCAAARG----
ATAAGAACAAAGGACTA
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGYWWRGCAAARG
-SCCTAGCAACAG
 G T A C A C T G A G T C C G A T G C A T C T G A A C T G A G T C C G T A C G T A C G T A T C A G A C T G
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G