Information for 3-RAGGCYTGRMARCTYC (Motif 10)

C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
Reverse Opposite:
A C T G C T G A C G T A A C T G A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C T G A G T C A G T C A C G T G A C T
p-value:1e-10
log p-value:-2.403e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 26.8bp
Average Position of motif in Background21.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RAGGCYTGRMARCTYC
-AGGCCTNG-------
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RAGGCYTGRMARCTYC
-AGGCCTAG-------
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RAGGCYTGRMARCTYC--
--GTATTGACAGCTNNTT
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C A C G T A C G T
A C G T A C G T A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:RAGGCYTGRMARCTYC
----CTTGGCAA----
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RAGGCYTGRMARCTYC
CAAAGGCGTGGCCAG---
 A C G T A C G T C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RAGGCYTGRMARCTYC--
--GGATTGACAGGTCNTT
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------RAGGCYTGRMARCTYC
GGGGCCGAGGCCTG--------
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:RAGGCYTGRMARCTYC--
--NTATTGACAGCTNNTT
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C A C G T A C G T
A C G T A C G T C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:RAGGCYTGRMARCTYC
---SCCTAGCAACAG-
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RAGGCYTGRMARCTYC--
--GTATTGACAGGTNNTT
 C T G A C G T A A C T G A C T G A G T C A G T C G A C T C T A G C T A G G T A C C G T A C T A G A G T C A C G T A G C T G T A C A C G T A C G T
A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T