Information for 5-CCAAGGGAAGAGG (Motif 12)

A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G T C A C G T A C G T A G T C A G T C A G T C A C G T A C G T A C T G A C T G
p-value:1e-4
log p-value:-1.100e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CCAAGGGAAGAGG-
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

EBF1/MA0154.3/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGGAAGAGG
ATTCCCAAGGGAAT---
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCAAGGGAAGAGG---
--TAGGGCAAAGGTCA
 A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCAAGGGAAGAGG
NGTCCCNNGGGA-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCAAGGGAAGAGG----
-NNAGGGACAAGGGCNC
 A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAAGGGAAGAGG---
-GTAGGGCAAAGGTCA
 A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCAAGGGAAGAGG-
----TGGAACAGMA
 A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

PB0124.1_Gabpa_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGGGAAGAGG-
NNNNGGGGGAAGANGG
 A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G A C G T
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAAGGGAAGAGG
CAAAGGTCAG---
 A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAAGGGAAGAGG
BTCAAGGTCA----
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A C T G C G T A C G T A A C T G C G T A A C T G A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T