Information for 5-CGAGAGGCGG (Motif 3)

A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G
Reverse Opposite:
G T A C A G T C A C T G A G T C G T A C A C G T A G T C A G C T A G T C T A C G
p-value:1e-9
log p-value:-2.253e+01
Information Content per bp:1.847
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif6.09%
Number of Background Sequences with motif273.0
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets49.8 +/- 33.5bp
Average Position of motif in Background52.7 +/- 37.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP2/MA0516.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CGAGAGGCGG---
GGGNGGGGGCGGGGC
 A C G T A C G T A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGAGAGGCGG------
NAGANTGGCGGGGNGNA
 A C G T A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGAGAGGCGG---
--GGGGGCGGGGC
 A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGAGAGGCGG-----
-AGGGGGCGGGGCTG
 A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

PB0110.1_Bcl6b_2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGAGAGGCGG----
NNTNAGGGGCGGNNNN
 A C G T A C G T A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGAGAGGCGG------
-CAAAGGCGTGGCCAG
 A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PB0202.1_Zfp410_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGAGAGGCGG-----
NNTNNGGGGCGGNGNGN
 A C G T A C G T A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGAGAGGCGG----
--GGGGGCGGGGCC
 A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGAGGCGG
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A C G T A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGAGAGGCGG---
---CWGGCGGGAA
 A T G C C T A G C T G A T C A G C G T A A C T G A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A