Information for 3-CCGGCAGGCA (Motif 10)

A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G T C A C G T A T C G A G T C A G T C A C T G A C T G
p-value:1e-6
log p-value:-1.503e+01
Information Content per bp:1.911
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif6.06%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets36.3 +/- 7.1bp
Average Position of motif in Background46.0 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCAGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCGGCAGGCA-
--GGTTGGCAT
 A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGGCAGGCA----
SCAGYCADGCATGAC
 A C G T A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCGGCAGGCA-----
----AAGGCAAGTGT
 A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGCAGGCA-
-TBGCACGCAA
 A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCGGCAGGCA-
--NGTGGGCAT
 A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGGCAGGCA
TGCCCCCGGGCA
 A C G T A C G T A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCGGCAGGCA
CWGGCGGGAA
 A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCAGGCA
TNNGGGCAG---
 A C G T A C G T A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGGCAGGCA
TGCCCCAGGGCA
 A C G T A C G T A G T C T G A C A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A