Information for 4-GCGCCGGCTAGCG (Motif 5)

A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A C G T C G T A A C T G A G T C A G T C A C T G A C T G A G T C A C T G A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets79.0 +/- 0.0bp
Average Position of motif in Background58.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCGGCTAGCG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCGGCTAGCG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGGCTAGCG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NRF1/MA0506.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCGGCTAGCG
TGCGCAGGCGC---
 A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGGCTAGCG
AGCGCGCC--------
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCGGCTAGCG
ATGCCCGGGCATGT-
 A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCGCCGGCTAGCG
GCTCCG-------
 A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGGCTAGCG
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G A C G T A C G T A C G T

PB0179.1_Sp100_2/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GCGCCGGCTAGCG-
TCCGTCGCTTAAAAG
 A C G T A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G A C G T
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GCGCCGGCTAGCG
GCTCGGSCTC---
 A C T G A G T C A C T G A G T C A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A C T G
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T