Information for 1-GAGAGTAAAT (Motif 1)

A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A A G T C A C G T A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.144e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif100.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.0 +/- 0.0bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGAGTAAAT-
-WAAGTAAAYA
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGAGTAAAT-
-AAAGTAAACA
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GAGAGTAAAT---
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGAGTAAAT
NACAGGAAAT
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGAGTAAAT-
-AAAGTAAACA
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GAGAGTAAAT---
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGAGTAAAT-----
CAAAGTAAACANNNN
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGTAAAT----
NCWRWGTAAACANSV
 A C G T A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGAGTAAAT---
-TATGTAAACANG
 A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGTAAAT
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C G T A C G T A C G T A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T