Information for 1-CAGCAGAAATGCT (Motif 2)

T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
Reverse Opposite:
G T C A A C T G T G A C G C T A C A G T G C A T A C G T A G T C A C G T A C T G A G T C C G A T A C T G
p-value:1e-12
log p-value:-2.837e+01
Information Content per bp:1.776
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif29.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets52.8 +/- 26.1bp
Average Position of motif in Background51.5 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRL/MA0842.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGAAATGCT
GTCAGCANNTN----
 A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGCAGAAATGCT
--CCWGGAATGY-
 T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGAAATGCT
HWWGTCAGCAWWTTT---
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAGCAGAAATGCT
CTGAGTCAGCAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGAAATGCT
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGAAATGCT
CACAGCAGGGGG---
 A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

MAFF/MA0495.1/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CAGCAGAAATGCT
GCTGAGTCAGCAATTTTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
A T C G G T A C G C A T C T A G C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A G C A T G C A T G C A T G A C T G C A T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGCAGAAATGCT
---CACTAATT--
 T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGAAATGCT
ANCAGCTG-------
 A C G T A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCAGAAATGCT
AAAGRGGAAGTG--
 A C G T T A G C C G T A A C T G A G T C C G T A A C T G G T C A C G T A G C T A C A G T A C T G T A G C A C G T
C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G A C G T A C G T