Information for 1-CGAGCCAATC (Motif 3)

A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
Reverse Opposite:
C A T G T C G A C A G T A C G T C T A G A C T G A T G C A G C T A T G C T A C G
p-value:1e-9
log p-value:-2.147e+01
Information Content per bp:1.624
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif58.06%
Number of Background Sequences with motif5144.1
Percentage of Background Sequences with motif11.37%
Average Position of motif in Targets46.5 +/- 28.0bp
Average Position of motif in Background48.6 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CGAGCCAATC-
ACTAGCCAATCA
 A C G T A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:CGAGCCAATC--
--AGCCAATCGG
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CGAGCCAATC
--TGCCAA--
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGAGCCAATC
CGTGCCAAG-
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CGAGCCAATC--
AAATGGACCAATCAG
 A C G T A C G T A C G T A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGAGCCAATC
AGCGCGCC----
 A C G T A C G T A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGAGCCAATC
-CAGCC----
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGAGCCAATC-------
CGACCCAATCAACGGTG
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CGAGCCAATC--
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGAGCCAATC
-ATGCCAACC
 A T G C T A C G T C G A A T C G A G T C A G T C T G C A G T C A A G C T G T A C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C