Information for 1-TCYRMCCMGCAAC (Motif 1)

A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G A G T C A C G T A C T G A C T G A C T G A G T C C T G A C T A G C G T A
p-value:1e-16
log p-value:-3.809e+01
Information Content per bp:1.877
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif16.13%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.4 +/- 12.1bp
Average Position of motif in Background58.1 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCYRMCCMGCAAC--
---SCCTAGCAACAG
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCYRMCCMGCAAC---
-CCGCATAGCAACGGA
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCYRMCCMGCAAC----
TACGCCCCGCCACTCTG
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCYRMCCMGCAAC---
TCGTACCCGCATCATT
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCYRMCCMGCAAC-
TGTTKCCTAGCAACM
 A C G T A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCYRMCCMGCAAC
---TACCCGCATN
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C
A C G T A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCYRMCCMGCAAC---
-TACCATAGCAACGGT
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCYRMCCMGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0110.1_Bcl6b_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TCYRMCCMGCAAC
ATCCCCGCCCCTAAAA
 A C G T A C G T A C G T A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TCYRMCCMGCAAC
--TGCCCAGNHW-
 A C G T A G T C A G C T C T A G G T A C A G T C A G T C T G C A A C T G A G T C C G T A C G T A A G T C
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T