Information for 6-GCACGTTAAT (Motif 18)

C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T
Reverse Opposite:
C G T A A G C T A C G T C G T A C G T A A G T C C A T G A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.943e+01
Information Content per bp:1.862
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif28.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets42.2 +/- 20.9bp
Average Position of motif in Background51.8 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCACGTTAAT---
--ATATTAATTAA
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0051.1_Hoxa4/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCACGTTAAT--------
-CNAGTTAATTAATAANN
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C G A G T C A T C A G G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G C T C T G A C T G A G A C T G A T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GCACGTTAAT--
----GKTAATGR
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GCACGTTAAT---
-----TTAATTAN
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PH0059.1_Hoxb4/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCACGTTAAT--------
-CGCGTTAATTAATTACC
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A G C C T A G G T A C C T A G G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G C T G C A T T G C A G T A C A G T C

PH0128.1_Otp/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCACGTTAAT--------
-CNNATTAATTAATTNNN
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GCACGTTAAT---
-----TTAATTAN
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

PH0069.1_Hoxc4/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCACGTTAAT--------
-CGAATTAATTAACAATA
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G G T C A C T G A G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A A G T C G C T A T G C A G C A T G T C A

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCACGTTAAT----
----NTTAATTAGN
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

PH0011.1_Alx1_2/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCACGTTAAT--------
-CGCATTAATTAATTGGC
 C T A G A G T C C G T A G T A C C T A G A C G T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C