Information for 6-GCGCTGGGGT (Motif 20)

A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G T C A G T C C G T A A C T G A G T C A C T G A G T C
p-value:1e-2
log p-value:-5.627e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.0 +/- 25.3bp
Average Position of motif in Background49.1 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCGCTGGGGT--
--GCTGTGGTTT
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGCTGGGGT---
---CTGTGGTTTN
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGCTGGGGT--
-GTCTGTGGTTT
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCGCTGGGGT--
--NNTGTGGTTT
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

TFAP2B/MA0811.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCGCTGGGGT-
TGCCCTNGGGCA
 A C G T A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCGCTGGGGT-
TGCCCNGGGGCA
 A C G T A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCGCTGGGGT
-NGCTN----
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCGCTGGGGT---
-NNHTGTGGTTWN
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

SREBF2/MA0596.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCGCTGGGGT---
---ATGGGGTGAT
 A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T

NRF1/MA0506.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCGCTGGGGT
TGCGCAGGCGC
 A C G T A C T G A G T C A C T G A G T C A C G T A C T G A C T G A C T G A C T G A C G T
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C