Information for 10-AGTTTTAAAA (Motif 10)

T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A
Reverse Opposite:
A G C T C A G T G C A T C G A T G C T A T C G A T C G A G T C A G T A C A G C T
p-value:1e-8
log p-value:-1.968e+01
Information Content per bp:1.654
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif1497.6
Percentage of Background Sequences with motif3.09%
Average Position of motif in Targets47.4 +/- 25.6bp
Average Position of motif in Background50.1 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGTTTTAAAA
CGGTTTCAAA-
 A C G T T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTTTTAAAA-
GGTCGTAAAAA
 T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTTTTAAAA---
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTTTTAAAA-
AGTCGTAAAAA
 T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTTTTAAAA---
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGTTTTAAAA-
--ATTTGAATT
 T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTTTTAAAA---
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTTTTAAAA-
-GTCGTAAAAA
 T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTTTTAAAA----
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTTTTAAAA--
--TTTTATTRGN
 T C G A C A T G C A G T A G C T A G C T C G A T G C T A C G T A G T C A T C G A A C G T A C G T
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A