Information for 11-TCCTTTCTGG (Motif 11)

G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
Reverse Opposite:
T A G C G T A C C G T A T C A G C T G A G C T A C T G A C T A G T C A G C G T A
p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.825
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif376.4
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets47.0 +/- 27.0bp
Average Position of motif in Background49.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TCCTTTCTGG
NNGCACCTTTCTCC
 A C G T A C G T A C G T A C G T G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCCTTTCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TCCTTTCTGG---
---GGTCTGGCAT
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TCCTTTCTGG
--CTGTCTGG
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCCTTTCTGG
-CCTTTGTT-
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCTTTCTGG----
ANTCCTTTGTCTNNNN
 A C G T A C G T G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCCTTTCTGG
VBSYGTCTGG
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCCTTTCTGG
-CCWTTGTY-
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCCTTTCTGG
--CTTTGT--
 G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCCTTTCTGG
ACTTTCGTTTCT--
 A C G T A C G T A C G T A C G T G C A T A G T C A G T C G A C T C G A T A G C T A G T C A C G T A C T G A T C G
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T