Information for 5-CAGAGGGCGCTCC (Motif 2)

A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
Reverse Opposite:
C T A G A T C G C T G A A C T G A T G C C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T A G
p-value:1e-24
log p-value:-5.577e+01
Information Content per bp:1.782
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif24.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets35.2 +/- 19.6bp
Average Position of motif in Background49.7 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGCTCC---
TTGGGGGCGCCCCTAG
 A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGGCGCTCC--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGCTCC--
ATAAGGGCGCGCGAT
 A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGGCGCTCC
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGAGGGCGCTCC--
ATAAAGGCGCGCGAT
 A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGAGGGCGCTCC
TGTCAGGGGGCG----
 A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGGGCGCTCC
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGGGCGCTCC
AACAGATGGC-----
 A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGCGCTCC-
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGAGGGCGCTCC
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C G T C A T A C G C T G A A C T G C T A G A C T G G T A C A T C G G T A C A G C T A T G C G A T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T