Information for 5-RAGGGCSCCCTCT (Motif 2)

T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C T A G A C T G A C T G A T C G C T A G A G T C A G T C A G T C A C G T A G C T
p-value:1e-23
log p-value:-5.508e+01
Information Content per bp:1.847
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.3 +/- 11.0bp
Average Position of motif in Background57.9 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RAGGGCSCCCTCT-
NNNGGGGCGCCCCCNN
 A C G T A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

E2F3/MA0469.2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RAGGGCSCCCTCT--
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RAGGGCSCCCTCT
ATAAGGGCGCGCGAT
 A C G T A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RAGGGCSCCCTCT-
AAAATGGCGCCATTTT
 A C G T A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RAGGGCSCCCTCT------
CNNBRGCGCCCCCTGSTGGC
 A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RAGGGCSCCCTCT
---GGCGCGCT--
 T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RAGGGCSCCCTCT
--AAGACCCYYN-
 T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RAGGGCSCCCTCT
-AGGVNCCTTTGT
 T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RAGGGCSCCCTCT--
---GCCGCCATCTTG
 T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--RAGGGCSCCCTCT
ATAAAGGCGCGCGAT
 A C G T A C G T T C G A C G T A C T A G A C T G A C T G A G T C T A C G A G T C A G T C A G T C A C G T A G T C A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T