Information for 12-CCGTTTCTGGGCC (Motif 12)

A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C C G T A A C T G C G T A G T C A C G T A G T A C C T A G A C T G
p-value:1e-8
log p-value:-1.916e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 25.0bp
Average Position of motif in Background10.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCGTTTCTGGGCC
---WDNCTGGGCA
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CCGTTTCTGGGCC-
------CTAGGCCT
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCGTTTCTGGGCC
CCATATATGG---
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCGTTTCTGGGCC---
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C A C G T A C G T A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGTTTCTGGGCC
VBSYGTCTGG---
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCGTTTCTGGGCC
CTGTTGCTAGGS-
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCGTTTCTGGGCC
--CTGTCTGG---
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCGTTTCTGGGCC--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCGTTTCTGGGCC
CCATATATGGNA-
 A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T

SRF/MA0083.3/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGTTTCTGGGCC
TGNCCATATATGGTCA
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A G T C A G T C
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A