Information for 10-GAKGAAAAAT (Motif 44)

C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
Reverse Opposite:
T G C A G C A T G A C T G C A T G C A T C A G T G T A C T G C A A G C T G A T C
p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.625
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif12.12%
Number of Background Sequences with motif3455.5
Percentage of Background Sequences with motif7.13%
Average Position of motif in Targets55.5 +/- 25.0bp
Average Position of motif in Background50.0 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAKGAAAAAT-
-ATGAATATTC
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAKGAAAAAT
NATGGAAAAN
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAKGAAAAAT
AATGGAAAAT
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAKGAAAAAT-
AAATAAGAAAAAAC
 A C G T A C G T A C G T C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAKGAAAAAT------
AATGAACAATGGAATT
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAKGAAAAAT-----
NNNNNGAACAATTGANN
 A C G T A C G T C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAKGAAAAAT---
-ATGCATAATTCA
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAKGAAAAAT
ATGATGCAAT--
 A C G T A C G T C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAKGAAAAAT
AATGGAAAAT
 C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAKGAAAAAT
MTGATGCAAT--
 A C G T A C G T C T A G T C G A A C G T C A T G G T C A C G T A C G T A C T G A C G T A A C G T
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T