Information for 9-ACAAGCATATAAAGGG (Motif 17)

C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
Reverse Opposite:
A G T C G T A C G T A C A C G T A C G T A G C T C G T A A C G T C G T A A C G T A T C G A G T C C G A T C G A T T C A G G A C T
p-value:1e-10
log p-value:-2.413e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets62.9 +/- 23.1bp
Average Position of motif in Background47.6 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
AYATGYATATGCATR-
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
----GNCTATAAAAGG
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
A C G T A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:ACAAGCATATAAAGGG-----
------GTATAAAAGGCGGGG
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.56
Offset:6
Orientation:forward strand
Alignment:ACAAGCATATAAAGGG-----
------GTATAAAAGGCGGGG
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACAAGCATATAAAGGG
CTCATGAATATTCAT--
 A C G T C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
ATATGCAAATNNN---
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
----GHATATKCAT--
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
--AAGGATATNTN---
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ACAAGCATATAAAGGG
ATTTGCATAACAATG-
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACAAGCATATAAAGGG
ATTTGCATACAATGG-
 C G T A A G T C G C T A C G T A C T A G T A G C G T C A G C A T T C G A G C A T C T G A T G C A C G T A A C T G C A T G A C T G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T