Information for 2-CTCCCTTTCTTCC (Motif 6)

A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
Reverse Opposite:
C T A G A C T G C T G A C G T A C T A G C G T A G T C A C G T A A C T G A C T G A C T G C G T A C T A G
p-value:1e-12
log p-value:-2.839e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 29.5bp
Average Position of motif in Background46.2 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
---YCTTTGTTCC
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CTCCCTTTCTTCC
CCTTCCTTCCTTCCTTCC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
---CCTTTGTTTT
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
--NCCATTGTTC-
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
---CCTTTGTT--
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTCCCTTTCTTCC
NNGCACCTTTCTCC-
 A C G T A C G T A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTTTCTTCC---
TNNTCCTTTGTTCTNNT
 A C G T A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTTTCTTCC---
NNNTCCTTTGTTCTNNN
 A C G T A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
---CCWTTGTY--
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCCCTTTCTTCC
---CCWTTGTYYB
 A G T C A C G T A G T C A G T C A G T C A C G T A C G T A C G T A G T C A C G T A G C T A G T C A G T C
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G