Information for 25-CTGCAAGTATCAT (Motif 48)

A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C T G A C G A T C G T A A G T C A C G T C G A T A C T G A T G C C G T A A C T G
p-value:1e-5
log p-value:-1.366e+01
Information Content per bp:1.846
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.1 +/- 28.6bp
Average Position of motif in Background46.4 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGCAAGTATCAT-
---AATGTATCAAT
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGCAAGTATCAT-
--BTVATTWGCATA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F3/MA0788.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTGCAAGTATCAT---
---AAATTAGCATAAT
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTGCAAGTATCAT--
---TAATTTGCATAA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTGCAAGTATCAT--
---TAATTTGCATAA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTGCAAGTATCAT-
-----ATTTGCATA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTGCAAGTATCAT----
--TNGAATTTCATTNAN
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTGCAAGTATCAT---
----AATTTGCATANT
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CTGCAAGTATCAT-
-----ATTTGCATA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGCAAGTATCAT----
-TNTAATTTGCATACNA
 A G T C A C G T A T C G G T A C C G T A C G T A C T A G A C G T C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A