Information for 18-CAGAGCACAGGWA (Motif 39)

A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A
Reverse Opposite:
A C G T G C T A A G T C A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T C T A G
p-value:1e-7
log p-value:-1.763e+01
Information Content per bp:1.783
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.5 +/- 27.6bp
Average Position of motif in Background50.6 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGAGCACAGGWA
-ACATCAAAGGNA
 A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0040.1_Lef1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCACAGGWA--
NANAGATCAAAGGGNNN
 A C G T A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCACAGGWA--
NNNAGATCAAAGGANNN
 A C G T A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

LEF1/MA0768.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGAGCACAGGWA-
AAAGATCAAAGGGTT
 A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGAGCACAGGWA--
TATAGATCAAAGGAAAA
 A C G T A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGAGCACAGGWA
AAAGATCAAAGGAA
 A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf7/MA0769.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGAGCACAGGWA
AAAGATCAAAGG--
 A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGAGCACAGGWA--
TATAGATCAAAGGAAAA
 A C G T A C G T A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CAGAGCACAGGWA--
-----AACAGGAAGT
 A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGAGCACAGGWA
-ACWTCAAAGG--
 A G T C C G T A C T A G C G T A C T A G T A G C G T C A T G A C C G T A A C T G C T A G C G A T C G T A
A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T