Information for 14-CHGGCACACTGTT (Motif 36)

A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T
Reverse Opposite:
G T C A C G T A T A G C C G T A A C T G C G A T T A C G A C G T A C T G G A T C G A T C C G A T A T C G
p-value:1e-8
log p-value:-1.903e+01
Information Content per bp:1.712
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif49.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.1 +/- 27.5bp
Average Position of motif in Background47.7 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CHGGCACACTGTT-
----CCTGCTGAGH
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CHGGCACACTGTT--
AGCGGCACACACGCAA
 A C G T A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CHGGCACACTGTT--
CGAAGCACACAAAATA
 A C G T A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CHGGCACACTGTT---
-GAACADWATGTTCTT
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T A C G T
A C G T C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CHGGCACACTGTT
CCAGGAACAG----
 A C G T A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CHGGCACACTGTT
GCGACCACACTG--
 A C G T A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CHGGCACACTGTT---
-NNTCCTGCTGTGNNN
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CHGGCACACTGTT---
-GRACAGWMTGTYCTB
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T A C G T
A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CHGGCACACTGTT
----GACAATGNN
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CHGGCACACTGTT---
-GVACAGNMTGTYCTB
 A T G C G C T A C T A G C T A G A G T C G T C A A G T C C G T A A G T C C G A T A T C G C G A T C A G T A C G T A C G T A C G T
A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G