Information for 3-GTAATAAGAT (Motif 20)

C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T
Reverse Opposite:
C G T A A C G T T A G C A C G T A C G T C T G A A G C T A C G T C G T A G A T C
p-value:1e-10
log p-value:-2.309e+01
Information Content per bp:1.857
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif56.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets49.7 +/- 21.0bp
Average Position of motif in Background44.8 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAT---
TAGGTAATAAAATTCA
 A C G T A C G T A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAT
NTAATGAGCT
 C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAT
GTCATAAAAN
 C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAT----
AATGCAATAAAATTTAT
 A C G T A C G T A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTAATAAGAT--
GTAATCDGATTA
 C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

PH0151.1_Pou6f1_1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT---
GACGATAATGAGCTTGC
 A C G T A C G T A C G T A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAT
TTAATTAG--
 C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAT--
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTAATAAGAT
GGTAATAAAAA
 A C G T C T A G C G A T C G T A C T G A A G C T C G T A C G T A A T C G G T C A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A