Information for 2-YTGGDTGAAGGTRCAT (Motif 2)

A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T
Reverse Opposite:
T G C A A G C T A T C G A G C T G T C A G T A C T G A C A C G T C G A T A T G C G T C A G A C T A G T C G T A C C G T A T C G A
p-value:1e-13
log p-value:-3.133e+01
Information Content per bp:1.655
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif36.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets47.2 +/- 25.3bp
Average Position of motif in Background57.4 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.55
Offset:4
Orientation:forward strand
Alignment:YTGGDTGAAGGTRCAT---
----ATGAATATTCATGAG
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YTGGDTGAAGGTRCAT
NTTNTATGAATGTGNNC
 A C G T A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:YTGGDTGAAGGTRCAT
-TGGGGCAAAGGTCA-
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YTGGDTGAAGGTRCAT-
-GGGGTCAAAGTCCAAT
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.52
Offset:5
Orientation:forward strand
Alignment:YTGGDTGAAGGTRCAT--
-----TTCATTTGCATAT
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:YTGGDTGAAGGTRCAT
GTAGGGCAAAGGTCA-
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.51
Offset:8
Orientation:forward strand
Alignment:YTGGDTGAAGGTRCAT--
--------ATTTGCATAA
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

TEAD1/MA0090.2/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:YTGGDTGAAGGTRCAT
---NTGGAATGTG---
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T
A C G T A C G T A C G T C T G A G C A T T C A G C A T G C G T A T C G A C A G T A C T G A G C T C T A G A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:YTGGDTGAAGGTRCAT----
----TNTAATTTGCATACNA
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:YTGGDTGAAGGTRCAT----
----TNTAATTTGCATACNA
 A G C T C G A T A C T G A C T G C T G A C A G T A T C G C G T A C G T A A C T G C A T G A C G T C T G A A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A