Information for 2-GCTBVACTTTCCC (Motif 9)

C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C
Reverse Opposite:
A C T G A C T G A T C G C T G A G T C A C G T A A C T G C G A T A C G T T A G C G T C A A C T G A G T C
p-value:1e-7
log p-value:-1.642e+01
Information Content per bp:1.715
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif26.67%
Number of Background Sequences with motif121.1
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets49.5 +/- 35.1bp
Average Position of motif in Background51.1 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GCTBVACTTTCCC----
-----ACTTTCACTTTC
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCTBVACTTTCCC--
-----ATTTTCCATT
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T

NFATC3/MA0625.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCTBVACTTTCCC--
-----ATTTTCCATT
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCTBVACTTTCCC-----
---TCACTTTCACTTTCN
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCTBVACTTTCCC--
-----ATTTTCCATT
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTBVACTTTCCC---
--TGACCTTTGCCCTA
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTBVACTTTCCC----
--TGACCTTTGCCCTAN
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTBVACTTTCCC
--GGGAATTTCC-
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTBVACTTTCCC---
--TGACCTTTGCCCCA
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T
A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCTBVACTTTCCC----
--TGGACTTTGNNCTCN
 C T A G G T A C A C G T A C T G T C G A C G T A A G T C A C G T A C G T A G C T A T G C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T