Information for 1-AGGGCAMKGTASG (Motif 7)

C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G
Reverse Opposite:
A G T C A T C G A C G T T G C A A T G C G T A C A C T G C G A T C A T G T A G C A T G C T A G C A C G T
p-value:1e-7
log p-value:-1.726e+01
Information Content per bp:1.587
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif40.00%
Number of Background Sequences with motif615.3
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets36.3 +/- 25.6bp
Average Position of motif in Background48.1 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGGGCAMKGTASG---
-----CAGGTAAGTAT
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGGCAMKGTASG---
-GAGCACAGCAGGACA
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGGGCAMKGTASG-------
---TTNGGGTACGCCNNANN
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGGCAMKGTASG---
-CCACACAGCAGGAGA
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGGCAMKGTASG---
----CACAGCAGGGGG
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAMKGTASG---
AATCGCACTGCATTCCG
 A C G T C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGGCAMKGTASG---
-CCACACAGCAGGAGA
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGGGCAMKGTASG-----
---DCHCAGCAGGRGGCC
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGGGCAMKGTASG
---DCTCAGCAGG
 C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----AGGGCAMKGTASG
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T C G T A A C T G T A C G A C T G G A T C C G T A G T A C C A T G A T C G A C G T G T C A T A G C C T A G
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G