Information for 23-ACAGCACGGT (Motif 42)

C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C T G A C G T A C T G A G T C A C G T A C T G A C G T
p-value:1e-3
log p-value:-7.299e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.0 +/- 0.0bp
Average Position of motif in Background74.0 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ACAGCACGGT-
CACAGCAGGGGG
 A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACAGCACGGT-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCACGGT
DCTCAGCAGG--
 A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCACGGT
CACAGN-----
 A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACAGCACGGT-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCACGGT---
DCHCAGCAGGRGGCC
 A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACGGT
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACGGT
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ACAGCACGGT-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------ACAGCACGGT
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C T G A C T G A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T