Information for 4-SCARMYCAWMYTCCMM (Motif 4)

A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G A C T G A C T G G T C A C T G A A C T G C G A T A C G T A C T G C T A G A C G T A G T C A C G T A C T G A T C G
p-value:1e-8
log p-value:-1.879e+01
Information Content per bp:1.784
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.4 +/- 34.1bp
Average Position of motif in Background43.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RREB1/MA0073.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--SCARMYCAWMYTCCMM--
CCCCAAACCACCCCCCCCCA
 A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A A C G T A C G T
G T A C G T A C G T A C A G T C G T C A G T C A G T C A G T A C A G T C C G T A G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C T A G C T G A C

PB0124.1_Gabpa_2/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM-----
-----CCGTCTTCCCCCTCAC
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----SCARMYCAWMYTCCMM
NNNTCCATCCCATAANN---
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM
--GKVTCADRTTWC--
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:5
Score:0.51
Offset:11
Orientation:reverse strand
Alignment:SCARMYCAWMYTCCMM-
-----------TCCCCA
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-SCARMYCAWMYTCCMM
CANAGNNCAAAGTCCA-
 A C G T A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM
AGAGTCCAAAGTCCA-
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM
------CACATTCCAT
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM-
-GGGGTCAAAGTCCAAT
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:SCARMYCAWMYTCCMM---
---GGCAAAAGTCCAATAA
 A T G C A G T C C G T A C T A G G T C A A G T C A G T C C G T A G C A T G T A C A G C T A C G T A G T C A G T C G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T