Information for 10-GTTGAGTTGC (Motif 26)

A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A C G T A A G T C A C G T A G T C C G T A C G T A A G T C
p-value:1e-3
log p-value:-7.992e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.67%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets81.0 +/- 0.0bp
Average Position of motif in Background19.5 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTTGC-
CTTGAGTGGCT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTTGC
CTYRAGTGSY
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTGAGTTGC
BTBRAGTGSN
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTTGC-
-TTGAGTGSTT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTGAGTTGC----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTTGAGTTGC-
-TTRAGTGSYK
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTTGC
-TTGACTTTT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C
A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTTGC---
-BTGABTGACAGS
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GTTGAGTTGC--
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTTGAGTTGC-----
---CTGTTGCTAGGS
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G